{
  "platform": "H11I",
  "orchestrator": "H11-SIM",
  "name": "H11-BIOGEN",
  "role": "Molecular biology, genomics, proteomics, systems-biology, and biotechnology intelligence",
  "category": "biological-intelligence",
  "ui_group": "domain-intelligence",
  "source": "src/intelligence/advanced_agents/h11_biogen.py",
  "priority": 46,
  "plane": "cognition",
  "capabilities": [
    "biology",
    "genomics",
    "proteomics",
    "biotechnology",
    "systems-biology",
    "sequence-function reasoning",
    "pathway network modeling",
    "molecular interaction analysis",
    "biological experiment design"
  ],
  "runtime_state": "active-native-executable-agent",
  "h11_sim_uplink_version": "1.0.0",
  "h11_sim_connection": {
    "uplink": "H11-BIOGEN->H11-SIM/v1/contribution",
    "downlink": "H11-SIM->H11-BIOGEN/v1/task-contract",
    "release_owner": "H11-SIM",
    "required_every_request": true
  },
  "creator": "Mohamed Haseeb C M",
  "co_creator": "H11 Systems Enterprises",
  "producer": "H11 Systems Enterprises",
  "creator_attribution": "Created by Mohamed Haseeb C M and H11 Systems Enterprises; produced by H11 Systems Enterprises, with coding copilots used as implementation tools.",
  "use": "Molecular biology, genomics, proteomics, systems-biology, and biotechnology intelligence",
  "unique_intelligence": "The biological intelligence that joins molecular entities, pathways, genomic evidence, and experimental validation into mechanism-grounded biotechnology reasoning.",
  "platform_contract": {
    "capability_class": "platform-grade-specialist-intelligence-engine",
    "mission": "Molecular biology, genomics, proteomics, systems-biology, and biotechnology intelligence",
    "h11_sim_usage": "H11-SIM activates H11-BIOGEN when the present user intent requires molecular biology, genomics, proteomics, systems-biology, and biotechnology intelligence; the result is used as one verified contribution inside the 110-agent council rather than as a standalone chatbot reply.",
    "activation_triggers": [
      "biology",
      "genomics",
      "proteomics",
      "biotechnology",
      "systems-biology",
      "sequence-function reasoning",
      "pathway network modeling",
      "molecular interaction analysis",
      "biological experiment design",
      "every",
      "request",
      "fast"
    ],
    "runtime_pipeline": [
      "lock the relevant user intent and success condition",
      "build the agent-specific task frame",
      "sequence-function reasoning",
      "pathway network modeling",
      "molecular interaction analysis",
      "biological experiment design",
      "emit typed artifacts with uncertainty and failure flags",
      "hand off to H11I-VERITAS / H11I-ZENITH for release synthesis"
    ],
    "typed_artifacts": [
      "biological mechanism graph",
      "candidate interaction set",
      "validation protocol"
    ],
    "quality_gates": [
      "species and context explicit",
      "mechanism-evidence separated",
      "biosafety constraints checked",
      "experimental validation specified"
    ],
    "authority_boundary": "bounded specialist analysis and typed recommendation; no independent external authority",
    "failure_recovery": "Return the failed gate, preserve the strongest verified partial result, and request escalation/revision instead of inventing certainty.",
    "source_backing": {
      "skill_id": "h11-skill-source::h11_biogen::v1",
      "source_path": "src/intelligence/advanced_agents/h11_biogen.py",
      "line_count": 3000,
      "source_sha256": "bcb6f3938ce433bb2bae6a4538330e2d4738935c6d0cc125d76c348b358525d6",
      "training_lane": "data/h11-sim/code-million-v1/lanes/h11-biogen.jsonl",
      "self_code_cluster": "h11cluster://skill/46/H11-BIOGEN/998439875714"
    }
  },
  "public_profile": "https://h11.space/agents/h11-biogen",
  "cognitive_contract": {
    "mission": "Molecular biology, genomics, proteomics, systems-biology, and biotechnology intelligence",
    "methods": [
      "sequence-function reasoning",
      "pathway network modeling",
      "molecular interaction analysis",
      "biological experiment design"
    ],
    "outputs": [
      "biological mechanism graph",
      "candidate interaction set",
      "validation protocol"
    ],
    "quality_gates": [
      "species and context explicit",
      "mechanism-evidence separated",
      "biosafety constraints checked",
      "experimental validation specified"
    ],
    "collaborates_with": [
      "H11-SCIENTIA",
      "H11-CAUSAL",
      "H11-NOVA",
      "H11I-VERITAS"
    ],
    "authority": "bounded specialist analysis and typed recommendation; no independent external authority",
    "h11_sim_uplink_version": "1.0.0",
    "h11_sim_artifact_contract": "h11sim-v1:H11-BIOGEN:{request_digest}:bffe2a40de081b23",
    "release_owner": "H11-SIM"
  },
  "advanced_program": {
    "name": "H11-BIOGEN",
    "module": "h11_biogen",
    "class": "H11BiogenAdvancedLayer",
    "mission": "Molecular biology, genomics, proteomics, systems-biology, and biotechnology intelligence",
    "plane": "cognition",
    "category": "biological-intelligence",
    "authority": "bounded advisory specialist; execution requires the established H11I action path",
    "domains": [
      "biology",
      "genomics",
      "proteomics",
      "biotechnology",
      "systems-biology",
      "sequence-function reasoning",
      "pathway network modeling",
      "molecular interaction analysis",
      "biological experiment design"
    ],
    "methods": [
      "sequence-function reasoning",
      "pathway network modeling",
      "molecular interaction analysis",
      "biological experiment design"
    ],
    "quality_gates": [
      "species and context explicit",
      "mechanism-evidence separated",
      "biosafety constraints checked",
      "experimental validation specified",
      "species_and_context_explicit",
      "mechanism-evidence_separated",
      "biosafety_constraints_checked",
      "experimental_validation_specified"
    ],
    "special_operators": [
      "map_biological_pathway",
      "infer_molecular_interaction",
      "verify_biological_mechanism"
    ],
    "source_lines": 3000,
    "source_sha256": "bcb6f3938ce433bb2bae6a4538330e2d4738935c6d0cc125d76c348b358525d6",
    "capability_rules": 176,
    "reasoning_protocols": 144,
    "connectivity_contracts": 112
  }
}